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Which of the following properties of HIV makes it difficult to trace the source of the virus from one person to the next?


A) The transmission of the virus involves very few (often just one) viral particles.
B) HIV evolves very slowly within the host.
C) The host can have a genetically diverse population of viruses.
D) Molecular phylogenies of viruses cannot be constructed.
E) None of the above

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Which of the following statements about traits is false?


A) A trait may be considered ancestral or derived, depending on the point of reference.
B) Homoplastic traits can arise by convergent evolution.
C) Derived traits differ from their ancestral forms.
D) Synapomorphies are shared ancestral traits.
E) Traits may be lost by evolutionary reversal.

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Which of the following is not true of maximum likelihood or parsimony methods for inferring phylogeny?


A) The maximum likelihood method requires an explicit model of evolutionary character change.
B) The parsimony method is computationally easier than the maximum likelihood method.
C) The maximum likelihood method is easier to treat in a statistical framework.
D) The maximum likelihood method is most often used with molecular data.
E) Parsimony is usually used to infer time on a phylogenetic tree.

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Which of the following are commonly used to infer phylogenetic relationships among plants but not among animals?


A) Nuclear genes
B) Chloroplast genes
C) Mitochondrial genes
D) Ribosomal RNA genes
E) Protein-coding genes

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Tetramorium hispidum and T. spinosum are two species of ants that are related more closely to each other than they are to any other species. Thus, they are known as _______ species.

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The ratites are a group of flightless birds comprising the ostrich, emu, cassowaries, rheas, and kiwis. All share certain morphological similarities (such as a breastbone without a keel) not found in other birds, but they live on different continents. In the past, some ornithologists regarded their similarities as homoplasies, but they are now thought to be synapomorphies. Based on this information, you would conclude that the ratites were once regarded as a _______ group but are now believed to be _______.


A) polyphyletic; paraphyletic
B) paraphyletic; monophyletic
C) polyphyletic; monophyletic
D) monophyletic; polyphyletic
E) monophyletic; paraphyletic

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The system of binomial nomenclature was developed by


A) Motoo Kimura.
B) Emile Zuckerkandl.
C) Carolus Linneaus.
D) Charles Darwin.
E) Alfred Russell Wallace.

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Which of the following is a limitation of the use of morphology in phylogenetic analysis?


A) Some morphological variation has a genetic basis.
B) Few morphological traits can be directly compared across distant taxa.
C) Some taxa exhibit little morphological diversity.
D) Both a and b
E) Both b and c

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The phylogenetic tree below shows the evolutionary relationships of five species (A-E) relative to five traits (1-5). Based on this tree, fill in the table below it, using 1 to indicate the presence of a derived trait and 0 to indicate the presence of an ancestral trait. The phylogenetic tree below shows the evolutionary relationships of five species (A-E) relative to five traits (1-5). Based on this tree, fill in the table below it, using 1 to indicate the presence of a derived trait and 0 to indicate the presence of an ancestral trait.    The phylogenetic tree below shows the evolutionary relationships of five species (A-E) relative to five traits (1-5). Based on this tree, fill in the table below it, using 1 to indicate the presence of a derived trait and 0 to indicate the presence of an ancestral trait.

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The study of biodiversity is called


A) homology.
B) homoplasy.
C) systematics.
D) phylogeny.
E) synapomorphy.

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Discuss the application of the parsimony principle in the construction of phylogenetic trees.

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In the construction of a phylogenetic tr...

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Which of the following lists of taxonomic categories ranks them properly (from most inclusive to least inclusive) ?


A) Phylum, order, family, genus
B) Class, phylum, order, species
C) Order, class, family, genus
D) Family, order, class, kingdom
E) Kingdom, class, species, genus

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Traits that are similar in different species for reasons other than a shared common ancestor are known as _______.

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In the phylogenetic tree shown in Question 1, which species is considered the outgroup?

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Species D. The outgr...

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Which of the following sources of molecular data would be most helpful for a study of the evolutionary relationships of closely related animal species?


A) Chloroplast DNA
B) Mitochondrial DNA
C) The amino acid sequences of a protein found in all animals, such as cytochrome c
D) Ribosomal RNA sequences
E) Both b and d

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Which of the following statements about monophyletic groups is true?


A) They are clades.
B) They include all descendants of the common ancestor of the members of the group.
C) At least two "cuts" are required to remove a monophyletic group from a phylogenetic tree.
D) Both a and b
E) Both b and c

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Drosophila yakuba and D. santomea are each other's closest relatives. Therefore, they are considered _______ species.


A) rooted
B) parapyletic
C) homologous
D) daughter
E) sister

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Traits in two or more organisms that are similar, but not derived from a common ancestor, are called


A) homoplastic traits.
B) homologous traits.
C) ancestral traits.
D) synapomorphies.
E) paraphyletic.

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Which of the following statements describes a purpose for which biologists use phylogenetic trees?


A) For human diseases once found only in other animals, phylogenetic trees are helpful in determining when and where the infectious organisms first entered human populations.
B) Phylogenetic trees are useful for determining how many times a particular trait may have evolved independently within a lineage.
C) Phylogenetic trees can be used to reconstruct ancestral traits.
D) Phylogenetic trees can be used in conjunction with molecular clocks to estimate the timing of evolutionary events.
E) All of the above

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Which of the following groups have separate sets of rules for nomenclature?


A) Animals
B) Plants and fungi
C) Bacteria
D) Viruses
E) All of the above

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